Best Accounting Software for E-Commerce Sellers

E-commerce sellers often wear many hats. Most days they’re the operations managers. On other days, they’re the accountant. Juggling these responsibilities can become overwhelming if you don’t have the right tools. 

Related Podcast: E-commerce Accounting Essentials for Online Sellers

Today, we’re giving you a list of the best accounting software for e-commerce sellers. But first, let’s review what features you should look for in an accounting tool.

What To Look For in an E-Commerce Accounting Software

There are over a dozen options for accounting software out there. To make the most out of your investment, keep an eye out for the following: 

1. Easy Integration

A good e-commerce accounting software should seamlessly integrate with your online selling platforms and payment gateways. This ensures that all sales, expenses, and inventory data are automatically synced, saving you time and reducing the likelihood of errors.

2. Multi-Currency and Multi-Store Support

If you operate in different countries or manage multiple online stores, it's essential to choose software that supports multi-currency and multi-store operations. This feature will help in consolidating all your financial data in one place.

Quickbooks allows multi-currency payments to suppliers, accounts, and clients worldwide. 

3. Inventory Management

Effective inventory management is crucial for e-commerce success. Look for software that provides real-time inventory tracking, cost calculation, and reorder alerts to avoid stock-outs or overstocking issues.

Related Reading: The Ultimate Guide to Inventory Management

4. Automated Data Entry

Automation in data entry reduces manual effort and minimizes the risk of errors. An accounting software that can automate data entry tasks such as recording sales, expenses, and other transactions is highly beneficial.

5. Tax Compliance

Tax compliance is a complex but necessary aspect of e-commerce accounting. Software that can automate tax calculations, apply the correct tax rates, and generate tax reports will help ensure compliance and simplify tax filing.

6. Cloud-Based Access

Cloud-based accounting software allows you to access your financial data from anywhere, at any time. This feature is especially useful for e-commerce business owners who are often on the go.

7. Customer Support and Training

Quality customer support and training resources are crucial for making the most of your accounting software. Look for providers that offer robust support and training options to help you and your team get up to speed.

Best E-Commerce Accounting Software

Good accounting software not only keeps your financials in check but also helps offload tasks as your business grows. Below, we’ve gathered a few of the best service providers for e-commerce sellers. Take your time analyzing their features and tools to find the best fit for your needs.

NetSuite ERP (Best for Large Enterprises)

screenshot of netsuite erp accounting software for e-commerce sellers

When it comes to catering to the needs of large enterprises, NetSuite ERP stands tall. Its cloud-based architecture is a blessing, offering you the flexibility to manage your finances from wherever you are, whenever you need to. 

With NetSuite ERP, you’re not just keeping tabs on your financial transactions; you’re gaining a holistic view of your business’s financial landscape. This includes key metrics and real-time data that can be instrumental in steering your business towards growth. 

NetSuite ERP provides a suite of applications including Customer Relationship Management (CRM), Professional Services Automation (PSA), and more, all under one roof. 

However, its extensive feature set may come across as daunting for smaller businesses or those new to e-commerce accounting. The cost too might be on the higher side for smaller entities, making it a more fitting choice for well-established, larger enterprises.

A2X Accounting (Best for Integrations)

screenshot of A2X accounting software for e-commerce sellers

If you’re an Amazon seller, A2X Accounting might just be your new best friend. It's designed to automate the accounting for Amazon sellers, making reconciliation a breeze. 

Integration with QuickBooks Online and Xero is smooth, enabling you to keep your books tidy as you manage your Amazon sales. But remember, its specialization for Amazon means if you're selling on other platforms, you might need to explore additional or alternative solutions.

Zoho Books (Best for Zoho Users)

screenshot of zoho books accounting software for e-commerce sellers

For those already in the Zoho ecosystem, Zoho Books is a natural choice. Its seamless integration with other Zoho products will make your accounting processes more streamlined. 

It's user-friendly, making it easy to keep track of your finances without getting bogged down in complex accounting jargon. However, if you’re not a Zoho user, there might be a learning curve or you might find a better fit elsewhere.

Related Reading: Ultimate Guide to Starting Your E-commerce Business

Bench (Best for Hands-Off Accounting)

screenshot of bench accounting software for e-commerce sellers

Bench offers a unique blend of software plus service, providing you with a dedicated team of bookkeepers who manage your books for you. It’s an ideal choice if you prefer to have a hands-off approach to accounting, allowing you more time to focus on other critical aspects of your business. 

The monthly financial statements and expense categorization are a boon, providing clear insights into your financial health without you having to dig through piles of receipts.

However, the trade-off comes in customization. 

Unlike in-house software where you can tweak settings to your heart's content, Bench follows a more standardized process. Additionally, while you’ll have a team at your disposal, the outsourced nature may feel a tad less personal compared to having an in-house accountant.

Multiview ERP (Best for Financial Visibility)

screenshot of multiview erp accounting software for e-commerce sellers

Multiview ERP goes beyond traditional accounting software by offering a platform that provides superior financial visibility, which is paramount in making informed business decisions. 

Its real-time financial reporting is a game-changer, allowing you to have an up-to-the-minute understanding of your financial standing. 

Moreover, its Intercompany, Multicurrency, and Data Dimensioning features allow for complex financial operations

The downside? 

Similar to NetSuite, its plethora of features might be a bit much for smaller operations or those new to the e-commerce accounting scene. Choosing simpler software might be the best option in this case.

Acumatica Cloud ERP (Best for Customizability)

screenshot of acumatica cloud erp accounting software for e-commerce sellers

Acumatica stands out with its high degree of customizability, making it a go-to solution for e-commerce businesses with specific accounting needs. 

It allows you to tailor the software to align perfectly with your business processes. Its dashboards are customizable too, enabling you to have a clear view of the metrics that matter most to you. 

This ensures that as your business evolves, Acumatica can adapt alongside it. 

However, with this flexibility comes a steeper learning curve. It may require a more significant time investment or even a dedicated IT team to tailor the software to meet your exact needs.

Wave Accounting (Best Free E-commerce Accounting Software)

screenshot of wave accounting software for e-commerce sellers

Wave Accounting is a boon for budget-conscious e-commerce entrepreneurs. Despite being free, it offers a comprehensive set of accounting tools including income and expense tracking, invoicing, and receipt scanning—among others. 

Its user-friendly interface makes it easy for those without an accounting background to manage their finances. However, being a free solution, it may lack some of the advanced features or dedicated support services that come with paid solutions. 

It's a fantastic starter solution, but as your business scales, you might find yourself needing more robust features.

Xero (Best for Growing Teams)

screenshot of xero accounting software for e-commerce sellers

Xero is synonymous with simplicity and scalability. Its intuitive design makes it easy for growing teams to collaborate on financial tasks. Features like invoicing, inventory management, and bank reconciliation are straightforward, making the accounting process less daunting. 

It's also budget-friendly, a crucial factor for small to medium-sized enterprises. 

However, while Xero is user-friendly, it may lack some of the advanced features found in more enterprise-level solutions. 

As your business scales, you might find yourself exploring additional software to meet your evolving needs.

QuickBooks Online (Best for Small to Medium-Sized Enterprises)

screenshot of quickbooks accounting software for e-commerce sellers

QuickBooks Online is a tried-and-true solution, known for its ease of use and comprehensive feature set. Its range of features, from expense tracking to reporting, makes it an ideal choice for small to medium-sized e-commerce enterprises. 

The wealth of tutorials and vibrant community support are cherries on top, ensuring you have the resources to make the most of the software. 

However, as your business grows, you may find yourself outgrowing QuickBooks Online. It's a solid choice for SMEs, but larger enterprises or rapidly growing businesses might need to look towards more robust solutions eventually.

Freshbooks (Best for Automation)

screenshot of freshbooks accounting software for e-commerce sellers

FreshBooks shines when it comes to automation, easing your invoicing, expense tracking, and subscription management tasks. Its automated invoicing not only dispatches invoices but chases overdue payments, saving you time. 

Being cloud-based, it offers the flexibility to handle finances from anywhere, ideal for the bustling e-commerce world.

However, while user-friendly, it may lack some advanced features found in enterprise-centric solutions. 

FreshBooks is well-suited for small to medium-sized e-commerce businesses eyeing to automate their accounting chores, allowing more time for business growth.

Final Thoughts

The software options discussed in this article cater to a variety of needs. Each platform comes with its unique set of features aimed at simplifying your accounting processes, providing financial visibility, and ultimately contributing to your business’s success.

Investing in accounting software is investing in the financial health of your business. Your choice will largely depend on your business size, the platforms you sell on, and your personal preferences in managing finances. 

Whether you prefer a hands-on approach or wish to offload as many financial tasks as possible, there's a solution out there tailored to meet your needs.

Alexa Alix

Meet Alexa, a seasoned freelance writer with a flair for transforming intricate concepts into engaging narratives across an array of industries. With her passions extending to nature and literature, Alex is adept at weaving unique stories that resonate. She's always poised to collaborate and conjure compelling content that truly speaks to audiences.

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